Association Mapping and Development of Marker-Assisted Selection Tools for the Resistance to White Pine Blister Rust in the Alberta Limber Pine Populations.
Identifieur interne : 000211 ( Main/Exploration ); précédent : 000210; suivant : 000212Association Mapping and Development of Marker-Assisted Selection Tools for the Resistance to White Pine Blister Rust in the Alberta Limber Pine Populations.
Auteurs : Jun-Jun Liu [Canada] ; Richard A. Sniezko [États-Unis] ; Robert Sissons [Canada] ; Jodie Krakowski [Canada] ; Genoa Alger [Canada] ; Anna W. Schoettle [États-Unis] ; Holly Williams [Canada] ; Arezoo Zamany [Canada] ; Rachel A. Zitomer [États-Unis] ; Angelia Kegley [États-Unis]Source :
- Frontiers in plant science [ 1664-462X ] ; 2020.
Abstract
Since its introduction to North America in the early 1900s, white pine blister rust (WPBR) caused by the fungal pathogen Cronartium ribicola has resulted in substantial economic losses and ecological damage to native North American five-needle pine species. The high susceptibility and mortality of these species, including limber pine (Pinus flexilis), creates an urgent need for the development and deployment of resistant germplasm to support recovery of impacted populations. Extensive screening for genetic resistance to WPBR has been underway for decades in some species but has only started recently in limber pine using seed families collected from wild parental trees in the USA and Canada. This study was conducted to characterize Alberta limber pine seed families for WPBR resistance and to develop reliable molecular tools for marker-assisted selection (MAS). Open-pollinated seed families were evaluated for host reaction following controlled infection using C. ribicola basidiospores. Phenotypic segregation for presence/absence of stem symptoms was observed in four seed families. The segregation ratios of these families were consistent with expression of major gene resistance (MGR) controlled by a dominant R locus. Based on linkage disequilibrium (LD)-based association mapping used to detect single nucleotide polymorphism (SNP) markers associated with MGR against C. ribicola, MGR in these seed families appears to be controlled by Cr4 or other R genes in very close proximity to Cr4. These associated SNPs were located in genes involved in multiple molecular mechanisms potentially underlying limber pine MGR to C. ribicola, including NBS-LRR genes for recognition of C. ribicola effectors, signaling components, and a large set of defense-responsive genes with potential functions in plant effector-triggered immunity (ETI). Interactions of associated loci were identified for MGR selection in trees with complex genetic backgrounds. SNPs with tight Cr4-linkage were further converted to TaqMan assays to confirm their effectiveness as MAS tools. This work demonstrates the successful translation and deployment of molecular genetic knowledge into specific MAS tools that can be easily applied in a selection or breeding program to efficiently screen MGR against WPBR in Alberta limber pine populations.
DOI: 10.3389/fpls.2020.557672
PubMed: 33042181
PubMed Central: PMC7522202
Affiliations:
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Schoettle</name><affiliation wicri:level="2"><nlm:affiliation>USDA Forest Service, Rocky Mountain Research Station, Fort Collins, CO, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USDA Forest Service, Rocky Mountain Research Station, Fort Collins, CO</wicri:regionArea><placeName><region type="state">Colorado</region></placeName></affiliation></author><author><name sortKey="Williams, Holly" sort="Williams, Holly" uniqKey="Williams H" first="Holly" last="Williams">Holly Williams</name><affiliation wicri:level="1"><nlm:affiliation>Canadian Forest Service, Natural Resources Canada, Victoria, BC, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Canadian Forest Service, Natural Resources Canada, Victoria, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation></author><author><name sortKey="Zamany, Arezoo" sort="Zamany, Arezoo" uniqKey="Zamany A" first="Arezoo" last="Zamany">Arezoo Zamany</name><affiliation wicri:level="1"><nlm:affiliation>Canadian Forest Service, Natural Resources Canada, Victoria, BC, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Canadian Forest Service, Natural Resources Canada, Victoria, BC</wicri:regionArea><wicri:noRegion>BC</wicri:noRegion></affiliation></author><author><name sortKey="Zitomer, Rachel A" sort="Zitomer, Rachel A" uniqKey="Zitomer R" first="Rachel A" last="Zitomer">Rachel A. Zitomer</name><affiliation wicri:level="2"><nlm:affiliation>USDA Forest Service, Dorena Genetic Resource Center, Cottage Grove, OR, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USDA Forest Service, Dorena Genetic Resource Center, Cottage Grove, OR</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author><author><name sortKey="Kegley, Angelia" sort="Kegley, Angelia" uniqKey="Kegley A" first="Angelia" last="Kegley">Angelia Kegley</name><affiliation wicri:level="2"><nlm:affiliation>USDA Forest Service, Dorena Genetic Resource Center, Cottage Grove, OR, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USDA Forest Service, Dorena Genetic Resource Center, Cottage Grove, OR</wicri:regionArea><placeName><region type="state">Oregon</region></placeName></affiliation></author></analytic><series><title level="j">Frontiers in plant science</title><idno type="ISSN">1664-462X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Since its introduction to North America in the early 1900s, white pine blister rust (WPBR) caused by the fungal pathogen <i>Cronartium ribicola</i> has resulted in substantial economic losses and ecological damage to native North American five-needle pine species. The high susceptibility and mortality of these species, including limber pine (<i>Pinus flexilis</i>), creates an urgent need for the development and deployment of resistant germplasm to support recovery of impacted populations. Extensive screening for genetic resistance to WPBR has been underway for decades in some species but has only started recently in limber pine using seed families collected from wild parental trees in the USA and Canada. This study was conducted to characterize Alberta limber pine seed families for WPBR resistance and to develop reliable molecular tools for marker-assisted selection (MAS). Open-pollinated seed families were evaluated for host reaction following controlled infection using <i>C. ribicola</i> basidiospores. Phenotypic segregation for presence/absence of stem symptoms was observed in four seed families. The segregation ratios of these families were consistent with expression of major gene resistance (MGR) controlled by a dominant R locus. Based on linkage disequilibrium (LD)-based association mapping used to detect single nucleotide polymorphism (SNP) markers associated with MGR against <i>C. ribicola</i>, MGR in these seed families appears to be controlled by <i>Cr4</i> or other R genes in very close proximity to <i>Cr4</i>. These associated SNPs were located in genes involved in multiple molecular mechanisms potentially underlying limber pine MGR to <i>C. ribicola</i>, including NBS-LRR genes for recognition of <i>C. ribicola</i> effectors, signaling components, and a large set of defense-responsive genes with potential functions in plant effector-triggered immunity (ETI). Interactions of associated loci were identified for MGR selection in trees with complex genetic backgrounds. SNPs with tight Cr4-linkage were further converted to TaqMan assays to confirm their effectiveness as MAS tools. This work demonstrates the successful translation and deployment of molecular genetic knowledge into specific MAS tools that can be easily applied in a selection or breeding program to efficiently screen MGR against WPBR in Alberta limber pine populations.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">33042181</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>13</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-462X</ISSN><JournalIssue CitedMedium="Print"><Volume>11</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>Frontiers in plant science</Title><ISOAbbreviation>Front Plant Sci</ISOAbbreviation></Journal><ArticleTitle>Association Mapping and Development of Marker-Assisted Selection Tools for the Resistance to White Pine Blister Rust in the Alberta Limber Pine Populations.</ArticleTitle><Pagination><MedlinePgn>557672</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fpls.2020.557672</ELocationID><Abstract><AbstractText>Since its introduction to North America in the early 1900s, white pine blister rust (WPBR) caused by the fungal pathogen <i>Cronartium ribicola</i> has resulted in substantial economic losses and ecological damage to native North American five-needle pine species. The high susceptibility and mortality of these species, including limber pine (<i>Pinus flexilis</i>), creates an urgent need for the development and deployment of resistant germplasm to support recovery of impacted populations. Extensive screening for genetic resistance to WPBR has been underway for decades in some species but has only started recently in limber pine using seed families collected from wild parental trees in the USA and Canada. This study was conducted to characterize Alberta limber pine seed families for WPBR resistance and to develop reliable molecular tools for marker-assisted selection (MAS). Open-pollinated seed families were evaluated for host reaction following controlled infection using <i>C. ribicola</i> basidiospores. Phenotypic segregation for presence/absence of stem symptoms was observed in four seed families. The segregation ratios of these families were consistent with expression of major gene resistance (MGR) controlled by a dominant R locus. Based on linkage disequilibrium (LD)-based association mapping used to detect single nucleotide polymorphism (SNP) markers associated with MGR against <i>C. ribicola</i>, MGR in these seed families appears to be controlled by <i>Cr4</i> or other R genes in very close proximity to <i>Cr4</i>. These associated SNPs were located in genes involved in multiple molecular mechanisms potentially underlying limber pine MGR to <i>C. ribicola</i>, including NBS-LRR genes for recognition of <i>C. ribicola</i> effectors, signaling components, and a large set of defense-responsive genes with potential functions in plant effector-triggered immunity (ETI). Interactions of associated loci were identified for MGR selection in trees with complex genetic backgrounds. SNPs with tight Cr4-linkage were further converted to TaqMan assays to confirm their effectiveness as MAS tools. This work demonstrates the successful translation and deployment of molecular genetic knowledge into specific MAS tools that can be easily applied in a selection or breeding program to efficiently screen MGR against WPBR in Alberta limber pine populations.</AbstractText><CopyrightInformation>Copyright © 2020 Liu, Sniezko, Sissons, Krakowski, Alger, Schoettle, Williams, Zamany, Zitomer and Kegley.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Jun-Jun</ForeName><Initials>JJ</Initials><AffiliationInfo><Affiliation>Canadian Forest Service, Natural Resources Canada, Victoria, BC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sniezko</LastName><ForeName>Richard A</ForeName><Initials>RA</Initials><AffiliationInfo><Affiliation>USDA Forest Service, Dorena Genetic Resource Center, Cottage Grove, OR, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sissons</LastName><ForeName>Robert</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Parks Canada, Waterton Lakes National Park, Waterton Park, AB, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Krakowski</LastName><ForeName>Jodie</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Alberta Agriculture and Forestry, Edmonton, AB, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Alger</LastName><ForeName>Genoa</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Parks Canada, Waterton Lakes National Park, Waterton Park, AB, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schoettle</LastName><ForeName>Anna W</ForeName><Initials>AW</Initials><AffiliationInfo><Affiliation>USDA Forest Service, Rocky Mountain Research Station, Fort Collins, CO, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Williams</LastName><ForeName>Holly</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Canadian Forest Service, Natural Resources Canada, Victoria, BC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zamany</LastName><ForeName>Arezoo</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Canadian Forest Service, Natural Resources Canada, Victoria, BC, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zitomer</LastName><ForeName>Rachel A</ForeName><Initials>RA</Initials><AffiliationInfo><Affiliation>USDA Forest Service, Dorena Genetic Resource Center, Cottage Grove, OR, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kegley</LastName><ForeName>Angelia</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>USDA Forest Service, Dorena Genetic Resource Center, Cottage Grove, OR, United States.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>09</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Plant Sci</MedlineTA><NlmUniqueID>101568200</NlmUniqueID><ISSNLinking>1664-462X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Cronartium ribicola</Keyword><Keyword MajorTopicYN="N">association mapping</Keyword><Keyword MajorTopicYN="N">limber pine (Pinus flexilis)</Keyword><Keyword MajorTopicYN="N">major gene resistance (MGR)</Keyword><Keyword MajorTopicYN="N">marker-assisted selection (MAS)</Keyword><Keyword MajorTopicYN="N">plant effector-triggered immunity (ETI)</Keyword><Keyword MajorTopicYN="N">single nucleotide polymorphisms (SNPs)</Keyword><Keyword MajorTopicYN="N">white pine blister rust (WPBR)</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>04</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>08</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>10</Month><Day>12</Day><Hour>5</Hour><Minute>29</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>10</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>10</Month><Day>13</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33042181</ArticleId><ArticleId IdType="doi">10.3389/fpls.2020.557672</ArticleId><ArticleId IdType="pmc">PMC7522202</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Plant Physiol Biochem. 2017 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IdType="pubmed">16380716</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Canada</li><li>États-Unis</li></country><region><li>Colorado</li><li>Oregon</li></region></list><tree><country name="Canada"><noRegion><name sortKey="Liu, Jun Jun" sort="Liu, Jun Jun" uniqKey="Liu J" first="Jun-Jun" last="Liu">Jun-Jun Liu</name></noRegion><name sortKey="Alger, Genoa" sort="Alger, Genoa" uniqKey="Alger G" first="Genoa" last="Alger">Genoa Alger</name><name sortKey="Krakowski, Jodie" sort="Krakowski, Jodie" uniqKey="Krakowski J" first="Jodie" last="Krakowski">Jodie Krakowski</name><name sortKey="Sissons, Robert" sort="Sissons, Robert" uniqKey="Sissons R" first="Robert" last="Sissons">Robert Sissons</name><name sortKey="Williams, Holly" sort="Williams, Holly" uniqKey="Williams H" first="Holly" last="Williams">Holly Williams</name><name sortKey="Zamany, Arezoo" sort="Zamany, Arezoo" uniqKey="Zamany A" first="Arezoo" last="Zamany">Arezoo 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Sniezko</name></region><name sortKey="Kegley, Angelia" sort="Kegley, Angelia" uniqKey="Kegley A" first="Angelia" last="Kegley">Angelia Kegley</name><name sortKey="Schoettle, Anna W" sort="Schoettle, Anna W" uniqKey="Schoettle A" first="Anna W" last="Schoettle">Anna W. Schoettle</name><name sortKey="Zitomer, Rachel A" sort="Zitomer, Rachel A" uniqKey="Zitomer R" first="Rachel A" last="Zitomer">Rachel A. Zitomer</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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